What about connecting international flights? (arrival MNL, now CRK)

As you may all know by now, many small flights from the Provinces will now arrive to Clark instead of Manila. So what will happen to connecting flights to international?

For example, I'm supposed to have a flight to Kuala Lumpur. Usually it's Naga to MNL, then MNL to KLIA.

I'm quite disheartened.